I have compiled CT-CODE with everything except SOM set to 0.
I have the compiled bins now, but how do I insert these bins into main.dol?
@Wiimm Does SZS or ISO Tools have a command for that? That would be useful.
Anyways, I hope I get somekind of support soon.

Sorry if you were confused.
By compiling the CT-CODE source, I have multiple bins now.
bad1code.bin
boot_code.bin
boot_data.bin
mod1.bin
mod2.bin
and ovr1.bin
Is there some way of injecting these to a main.dol using SZS Tools? Maybe via WSTRT or WCTCT?

So
"wstrt patch main.dol --ct-dir (folder name)"?
EDIT: I get this when I try do that.

I need to pack the bins into a bz2 archive?

Since this doesn't seem to work for me. Is it possible you can do it for me?